XTMS: Pathway Search in an eXTended Metabolic Space: Tutorial

1. Submit compound query → 2. Select the target compound → 3. Select a pathway → 4. Get pathway information → 5. Get reaction information
References:
  • Carbonell, P., Parutto, P., Herisson, J., Pandit, S., Faulon, J.L. XTMS: Pathway design in an eXTended Metabolic Space. Nucleic Acids Research, 2014.
  • Carbonell, P., Parutto, P., Baudier, C., Junot, C., Faulon, J.L. Retropath: automated pipeline for embedded metabolic circuits. ACS Synthetic Biology, 2013. doi:10.1021/sb4001273
  • Carbonell, P., Fichera, D., Pandit, S.B., Faulon, J.L. Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms. BMC Systems Biology, 6:10, 2012. doi:10.1186/1752-0509-6-10
  • Carbonell P., Planson A.G., Fichera D., Faulon J.L. A retrosynthetic biology approach to metabolic pathway design for therapeutic production. BMC Systems Biology, 5:122, 2011. doi:10.1186/1752-0509-5-122